e. coli (test)
ecoli_collection Version 1 (Collection)
test upload of e coli from sbh prime

Cello E. Coli Parts
CelloEColiParts_collection Version 1 (Collection)
These are the Cello parts for E. Coli circuits

SBOL Compliant Software
SBOLCompliantSoftware_collection Version 1 (Collection)
A collection of software that supports the Synthetic Biology Open Language (SBOL) standard.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CryptococcusneoformansDatabaseinSyntheticBiologyOpenLanguage_collection Version 1 (Collection)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM_2016_interlab_collection
iGEM_2016_interlab_collection_collection Version 1 (Collection)
Devices from the iGEM 2016 interlab

BBa_K1428000
BBa_K1428000 Version 1 (Component)
T7 promoter-driven BMC structural genes with a His6-tagged component for purification

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

Free Genes Feature Libraries
free_genes_feature_libraries_collection Version 1 (Collection)
A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Cas9
CnDatabase_Cas9 Version 1 (Component)
Organism: Cryptococcus neoformans var. grubi H99

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_CnD_collection Version 1 (Collection)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_CnDatabase_collection Version 1 (Collection)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

CnU6
CnDatabase_CnU6_terminator Version 1 (Component)
Organism: Cryptococcus neoformans var. neoformans JEC21

GFP
CnDatabase_GFP Version 1 (Component)
Organism: Cryptococcus neoformans serotype A H99S

GPD
CnDatabase_GenBank_AE017346_Region_940695_942557 Version 1 (Component)
Organism: Cryptococcus neoformans var. neoformans JEC21

CnU6
CnDatabase_GenBank_AE017348_Region_871991_872263 Version 1 (Component)
Organism: Cryptococcus neoformans var. neoformans JEC21

GAL7
CnDatabase_GenBank_AE017353_Region_190704_1911746 Version 1 (Component)
Organism: Cryptococcus neoformans var. neoformans JEC21

URA5
CnDatabase_GenBank_CM000046_Region_301512_302226 Version 1 (Component)
Organism: Cryptococcus neoformans var. neoformans B-3501A

URA5
CnDatabase_GenBank_CM000046_Region_302227_303005 Version 1 (Component)
Organism: Cryptococcus neoformans var. neoformans B-3501A

URA5
CnDatabase_GenBank_CM000046_Region_303006_303540 Version 1 (Component)
Organism: Cryptococcus neoformans var. neoformans B-3501A

ACT1
CnDatabase_GenBank_CP003820_Region_1242235_1243067 Version 1 (Component)
Organism: Cryptococcus neoformans var. grubii H99 (Cryptococcus neoformans serotype A)

TRP1
CnDatabase_GenBank_CP003828_Region_1023919_1024166 Version 1 (Component)
Organism: Cryptococcus neoformans var. grubi H99

HOG1
CnDatabase_GenBank_CP003830_Region_176667_176966 Version 1 (Component)
Organism: Cryptococcus neoformans var. grubi H99

GAL1
CnDatabase_GenBank_CP003831_Region_176110_177085 Version 1 (Component)
Organism: Cryptococcus neoformans var. grubii H99

UGE2
CnDatabase_GenBank_CP003831_Region_176453_177430 Version 1 (Component)
Organism: Cryptococcus neoformans var. grubii H99

GAL7
CnDatabase_GenBank_CP003831_Region_178967_179986 Version 1 (Component)
Organism: Cryptococcus neoformans var. grubii H99

TEF1
CnDatabase_GenBank_CP003831_Region_375181_376053 Version 1 (Component)
Organism: Cryptococcus neoformans var. grubi H99

TEF1
CnDatabase_GenBank_CP003831_Region_377755_378976 Version 1 (Component)
Organism: Cryptococcus neoformans var. grubi H99

APP1
CnDatabase_GenBank_CP047908_Region_1244167_1244926 Version 1 (Component)
Organism: Cryptococcus neoformans var. grubii H99 (Cryptococcus neoformans serotype A)

HYG
CnDatabase_Hygromicin_Resistance Version 1 (Component)
Organism: Cryptococcus neoformans serotype A strain H99O

NEO (G418/Neomicin Resistance)
CnDatabase_Neomicin_Resistance Version 1 (Component)
Organism: Cryptococcus neoformans serotype A strain H99O

NAT (Nourseothricin Resistance/NrsR)
CnDatabase_Nourseothricin_resistance Version 1 (Component)
Organism: Cryptococcus neoformans serotype A H99S strain

amdS
CnDatabase_amdS Version 1 (Component)
Organism: Cryptococcus neoformans serotype A strain H99O

mCherry
CnDatabase_mCherry Version 1 (Component)
Organism: Cryptococcus neoformans serotype A H99S strain

SBOLDesigner CAD Tool
SBOL_Software_SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Devices from the iGEM 2016 interlab
iGEM_2016_interlab_collection Version 1 (Collection)
This is a collection of devices that were used in the 2016 iGEM interlab study

Test1
Test1_collection Version 1 (Collection)
Test1

Free Genes Feature Libraries
FreeGenesFeatureLibraries_collection Version 1 (Collection)
A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).

Intein_assisted_Bisection_Mapping
Intein_assisted_Bisection_Mapping_collection Version 1 (Collection)
Split inteins are powerful tools for seamless ligation of synthetic split proteins. Yet, their use remains limited because the already intricate split site identification problem is often complicated by the requirement of extein junction sequences. To address this, we augmented a mini-Mu transposon-based screening approach and devised the intein-assisted bisection mapping (IBM) method. IBM robustly revealed clusters of split sites on five proteins, converting them into AND or NAND logic gates. We further showed that the use of inteins expands functional sequence space for splitting a protein. We also demonstrated the utility of our approach over rational inference of split sites from secondary structure alignment of homologous proteins. Furthermore, the intein inserted at an identified site could be engineered by the transposon again to become partially chemically inducible, and to some extent enabled post-translational tuning on host protein function. Our work offers a generalizable and systematic route towards creating split protein-intein fusions and conditional inteins for protein activity control.

Altered Sequence Activities
AlteredSequenceActivities_collection Version 1 (Collection)
A set of activities to point to ways in which sequences have been altered between source and upload.

BBa_K1740000
BBa_K1740000 Version 1 (Component)
Dronpa 145N ORF (E. coli optimized)

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

BBF10K_003498_backbone
BBF10K_003498_backbone Version 1 (Component)
synthetic DNA

IBMc050
IBMc050 Version 1 (Component)
pSB1A3-BbsI-M86N-cat-Plux2-B32-M86C-SapI

IBMc052
IBMc052 Version 1 (Component)
pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry*-T

IBMc065
IBMc065 Version 1 (Component)
pSB3T5(BsaI-)-PBAD-B30-mCherry*(1-159)-GAG-M86N-cat-Plux2-B32-M86C-S-mCherry*(160-236)-T

IBMc071
IBMc071 Version 1 (Component)
pSB3T5(BsaI-)-PBAD(SapI-)-B33-ECF20-T